I've done a few cars.
I generally start by doing the ignition circuit (don't fuse) I then set up two fuse banks - one that is permanently live and the other that is only live when the ignition is live. Then quite methodically I do one circuit at a time eg main lights, indicators, brake lights, horn, stereo etc.
Use the wiring diagram in the manual for reference but don't get too tied to it - it has been carefully designed to use the absolute minimum wire, fuses etc. You can make something much better and robust yourself. There are various automotive wiring products companies out there but ebay can be cheaper. It's useful to have a scrap modern car to rob relays and flasher units off because these can be expensive.
Top tips...
Use a relay for the rad fan (if you have one) and overdrive. Personally I've use 0.75 - 1 mm2 wire (that's the sum of the cross sections of the wire strands added up within the wire rather than the width of the wire) for most stuff, but thicker stuff for the headlights and charging circuit.
Buy an electronic voltage regulator (ebay) rather than the electromecanical orginal ones - and use this for the fuel & temperature gauge feeds.
Buy a decent set of wire strippers, crimpers and cutter. Buy lots and lots of crimps (say 100 male bullets, 100 female bullets and 100 female lucars - blue unless you're using thin wire then buy red)
If you PM me I know a scrap cable dealer near Ledbury who will let you take some cable at just above scrap value. You'll have to rummage around his yard and pull out the bits you want - and pay cash!
It takes a surprising amount of time to do - 3 full days if you know (roughly) what you are doing and are going for a custom / proper job.
I've got a leisure feeding the non ignition linked fuse box with a voltage sensing relay connecting to the ignition/charging circuit. this way when the engine is off the stereo an internal lights work off the leisure battery. Have a look under readers rides - the snail.